Zijun Peng, Huajing Yu, Yizhou Wang, Dan Zhao, Hangwei Fa, Leyi Qin, Yilei Ma, Mengyang Geng, Yuqing Wu, Ge Wu, Xin Wu, Chengying Zhang, Yue Wang, Jianying Liu, Haitao Li, Zhimin Lu, Yongfeng Shang, Jing Liang YEATS4 reads histone crotonylation to promote fatty acid metabolism and cancer cell stemness,Cell Reports,44(10):116400

Yaosen Min#, Ye Wei#, Peizhuo Wang#, Xiaoting Wang, Han Li, Nian Wu, Stefan Bauer, Shuxin Zheng, Yu Shi, Yingheng Wang, Ji Wu, Dan Zhao*, Jianyang Zeng* From static to dynamic structures: Improving binding affinity prediction with graph-based deep learning,Advanced Science,2024, 11(40):e2405404

Tingzhong Tian#, Shuya Li#, Ziting Zhang, Lin Chen, Ziheng Zou, Dan Zhao*, Jianyang Zeng* Benchmarking compound activity prediction for real-world drug discovery applications,Communications Chemistry,2024, 7(1):127

Peizhuo Wang, Xiao Wen, Han Li, Peng Lang, Shuya Li, Yipin Lei, Hantao Shu, Lin Gao, Dan Zhao*, Jianyang Zeng* Deciphering driver regulators of cell fate decisions from single-cell transcriptomics data with CEFCON,Nature Communications,2023, 14(1):8459

Han Li, Ruotian Zhang, Yaoseng Min, Dacheng Ma, Dan Zhao*, Jianyang Zeng* A knowledge-guided pre-training framework for improving molecular representation learning,Nature Communications,2023, 14(1):7568

Shuya Li, Tingzhong Tian, Ziting Zhang, Ziheng Zou, Dan Zhao*, Jianyang Zeng* PocketAnchor: Learning structure-based pocket representations for protein-ligand interaction prediction,Cell Systems,2023, 14(8):692-705

Xingang Peng#, Yipin Lei#, Peiyuan Feng, Lemei Jia, Jianzhu Ma, Dan Zhao*, Jianyang Zeng* Characterizing the interaction conformation between T cell receptors and epitopes with deep learning,Nature Machine Intelligence,2023, 5:395–407

Han Li, Xinyi Zhao, Shuya Li, Fangping Wan, Dan Zhao*, Jianyang Zeng* Improving molecular property prediction through a task similarity enhanced transfer learning strategy,iScience,2022, 25(10):105231

Hantao Shu, Fan Ding, Jingtian Zhou, Yexiang Xue, Dan Zhao, Jianyang Zeng, Jianzhu Ma Boosting single-cell gene regulatory network reconstruction via bulk-cell transcriptomic data,Briefings in Bioinformatics,23(5):bbac389

Yipin Lei, Shuya Li, Ziyi Liu, Fangping Wan, Tingzhong Tian, Shao Li, Dan Zhao*, Jianyang Zeng* A deep-learning framework for multi-level peptide–protein interaction prediction,Nature Communications,2021, 12(1):5465

北京大学肿瘤医院2025年青年教师教学基本功比赛-优秀奖, 肿瘤表观遗传学, 第1完成人, 北京大学肿瘤医院, 2025.9

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肿瘤表观遗传调控及人工智能驱动的肿瘤靶向干预研究

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基于人工智能的分子互作模式解析, 课题负责人, 2027.1.1～2029.12.31, 国家自然科学基金委-青年科学基金（B类）

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